User Guide

This section provides a comprehensive guide for users to understand how to use the software effectively. It includes detailed instructions, examples, and best practices to help users navigate through the features and functionalities.

• Installation of required software
  • Installation of the latest version via Conda
  • Installation of development version
  • Installation of Snakemake plugins
• GPSW commands
  • Version
  • Help
  • GPSW fetch
  • GPSW run
• Configuration of Snakemake
• Run GPSW with test data
• Run GPSW with your own data
  • Fetching workflow code
  • Configuring GPSW
  • Running the workflow
• Workflow settings
  • Sample names
  • Bin number
  • Cutadapt settings
  • ORF library information
  • Alignment settings
  • MAGeCK/DrugZ settings
  • PSI settings
• Output files by directory
  • Images
  • Logs
  • Resources
  • Results
  • Output with multiple test conditions